Detailed information of SNP:
|
SNP ID:
sf0141569916(Gbrowse)
Chromosome: chr01 Position: 41569916 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 84.60% | 15.40% |
| All Indica | 784 | 77.93% | 22.07% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 368 | 65.49% | 34.51% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 203 | 81.28% | 18.72% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141569916 | T->C | LOC_Os01g71760(LOC_Os01g71760.1) | Non-Synonymous SNP |