Detailed information of SNP:
|
SNP ID:
sf0141596417(Gbrowse)
Chromosome: chr01 Position: 41596417 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 91.26% | 8.74% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141596417 | G->T | LOC_Os01g71820(LOC_Os01g71820.1) | Non-Synonymous SNP |