Detailed information of SNP:
|
SNP ID:
sf0141600151(Gbrowse)
Chromosome: chr01 Position: 41600151 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 71.50% | 28.50% |
| All Indica | 795 | 53.08% | 46.92% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 41 | 97.56% | 2.44% |
| Indica I | 373 | 60.86% | 39.14% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 209 | 63.16% | 36.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141600151 | G->A | INTERGENIC | None |