Detailed information of SNP:
|
SNP ID:
sf0141704240(Gbrowse)
Chromosome: chr01 Position: 41704240 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 798 | 34.71% | 65.29% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 13.87% | 86.13% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141704240 | A->G | INTERGENIC | None |