Detailed information of SNP:
|
SNP ID:
sf0141706752(Gbrowse)
Chromosome: chr01 Position: 41706752 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 53.91% | 46.09% |
| All Indica | 792 | 81.94% | 18.06% |
| All Japonica | 493 | 2.64% | 97.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 90 | 4.44% | 95.56% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141706752 | A->G | INTERGENIC | None |