Detailed information of SNP:
|
SNP ID:
sf0141728168(Gbrowse)
Chromosome: chr01 Position: 41728168 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.15% | 22.85% |
| All Indica | 798 | 61.03% | 38.97% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141728168 | C->T | LOC_Os01g72009(LOC_Os01g72009.1) | Synonymous |