Detailed information of SNP:
|
SNP ID:
sf0141728718(Gbrowse)
Chromosome: chr01 Position: 41728718 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.71% | 44.29% |
| All Indica | 798 | 24.19% | 75.81% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 3.48% | 96.52% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 17.54% | 82.46% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141728718 | T->C | INTERGENIC | None |