Detailed information of SNP:
SNP ID:
sf0141728733(Gbrowse)
Chromosome: chr01 Position: 41728733 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 88.58% | 11.42% |
All Indica | 798 | 81.20% | 18.80% |
All Japonica | 497 | 98.59% | 1.41% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 36.62% | 63.38% |
Indica Intermediate | 210 | 92.86% | 7.14% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 93.62% | 6.38% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0141728733 | C->G | INTERGENIC | None |