Detailed information of SNP:
SNP ID:
sf0141729146(Gbrowse)
Chromosome: chr01 Position: 41729146 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1414 | 83.38% | 16.62% |
All Indica | 794 | 78.84% | 21.16% |
All Japonica | 497 | 97.79% | 2.21% |
Aus | 67 | 38.81% | 61.19% |
Indica I | 375 | 97.60% | 2.40% |
Indica II | 211 | 33.18% | 66.82% |
Indica Intermediate | 208 | 91.35% | 8.65% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 93.62% | 6.38% |
Japonica Intermediate | 68 | 94.12% | 5.88% |
Group VI/Aromatic | 14 | 71.43% | 28.57% |
Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0141729146 | C->T | INTERGENIC | None |