Detailed information of SNP:



SNP ID: sf0141729146(Gbrowse)

Chromosome: chr01

Position: 41729146
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 83.38% 16.62%
All Indica794 78.84% 21.16%
All Japonica497 97.79% 2.21%
Aus67 38.81% 61.19%
Indica I375 97.60% 2.40%
Indica II211 33.18% 66.82%
Indica Intermediate208 91.35% 8.65%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0141729146 C->T INTERGENIC None