Detailed information of SNP:
|
SNP ID:
sf0141743027(Gbrowse)
Chromosome: chr01 Position: 41743027 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.66% | 34.34% |
| All Indica | 798 | 41.60% | 58.40% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 20.27% | 79.73% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141743027 | C->A | LOC_Os01g72020(LOC_Os01g72020.2) | Non-Synonymous SNP |
| sf0141743027 | C->A | LOC_Os01g72020(LOC_Os01g72020.1) | Non-Synonymous SNP |