Detailed information of SNP:
|
SNP ID:
sf0141746480(Gbrowse)
Chromosome: chr01 Position: 41746480 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 83.97% | 16.03% |
| All Indica | 778 | 72.75% | 27.25% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 87.90% | 12.10% |
| Indica II | 201 | 38.31% | 61.69% |
| Indica Intermediate | 205 | 79.02% | 20.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141746480 | A->T | INTERGENIC | None |