Detailed information of SNP:
|
SNP ID:
sf0141750227(Gbrowse)
Chromosome: chr01 Position: 41750227 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 56.61% | 43.39% |
| All Indica | 796 | 92.46% | 7.54% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141750227 | C->T | INTERGENIC | None |