Detailed information of SNP:
|
SNP ID:
sf0141760549(Gbrowse)
Chromosome: chr01 Position: 41760549 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.58% | 17.42% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 60.08% | 39.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 334 | 74.25% | 25.75% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141760549 | C->T | INTERGENIC | None |