Detailed information of SNP:
|
SNP ID:
sf0141762256(Gbrowse)
Chromosome: chr01 Position: 41762256 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.56% | 28.44% |
| All Indica | 797 | 59.47% | 40.53% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 211 | 22.75% | 77.25% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141762256 | G->A | INTERGENIC | None |