Detailed information of SNP:
|
SNP ID:
sf0141764370(Gbrowse)
Chromosome: chr01 Position: 41764370 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 89.81% | 10.19% |
| All Indica | 769 | 81.79% | 18.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 69.27% | 30.73% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141764370 | T->A | INTERGENIC | None |