Detailed information of SNP:
|
SNP ID:
sf0141765153(Gbrowse)
Chromosome: chr01 Position: 41765153 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.97% | 29.03% |
| All Indica | 796 | 50.25% | 49.75% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 30.21% | 69.79% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141765153 | T->C | INTERGENIC | None |