Detailed information of SNP:
SNP ID:
sf0141766206(Gbrowse)
Chromosome: chr01 Position: 41766206 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1417 | 77.63% | 22.37% |
All Indica | 797 | 62.23% | 37.77% |
All Japonica | 497 | 98.19% | 1.81% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 81.02% | 18.98% |
Indica II | 212 | 23.11% | 76.89% |
Indica Intermediate | 211 | 68.25% | 31.75% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 91.49% | 8.51% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0141766206 | G->A | INTERGENIC | None |