Detailed information of SNP:
|
SNP ID:
sf0141772324(Gbrowse)
Chromosome: chr01 Position: 41772324 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.67% | 41.33% |
| All Indica | 798 | 59.40% | 40.60% |
| All Japonica | 497 | 50.30% | 49.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 212 | 23.11% | 76.89% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 70.75% | 29.25% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141772324 | G->A | INTERGENIC | None |