Detailed information of SNP:
|
SNP ID:
sf0141781878(Gbrowse)
Chromosome: chr01 Position: 41781878 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.09% | 6.91% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141781878 | G->A | LOC_Os01g72049(LOC_Os01g72049.2) | INTRON |