Detailed information of SNP:
|
SNP ID:
sf0141816506(Gbrowse)
Chromosome: chr01 Position: 41816506 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 69.94% | 30.06% |
| All Indica | 795 | 52.70% | 47.30% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 72.99% | 27.01% |
| Indica II | 210 | 23.81% | 76.19% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141816506 | G->T | INTERGENIC | None |