Detailed information of SNP:
|
SNP ID:
sf0141820866(Gbrowse)
Chromosome: chr01 Position: 41820866 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.36% | 47.64% |
| All Indica | 797 | 55.21% | 44.79% |
| All Japonica | 497 | 48.89% | 51.11% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 71.47% | 28.53% |
| Indica II | 212 | 22.64% | 77.36% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141820866 | T->C | INTERGENIC | None |