Detailed information of SNP:
|
SNP ID:
sf0141828476(Gbrowse)
Chromosome: chr01 Position: 41828476 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.63% | 25.37% |
| All Indica | 796 | 61.43% | 38.57% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 373 | 79.36% | 20.64% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141828476 | C->T | INTERGENIC | None |