Detailed information of SNP:
|
SNP ID:
sf0141834335(Gbrowse)
Chromosome: chr01 Position: 41834335 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 61.32% | 38.68% |
| All Indica | 795 | 67.17% | 32.83% |
| All Japonica | 496 | 52.02% | 47.98% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 334 | 70.66% | 29.34% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141834335 | G->A | INTERGENIC | None |