Detailed information of SNP:
|
SNP ID:
sf0141834879(Gbrowse)
Chromosome: chr01 Position: 41834879 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 65.18% | 34.82% |
| All Indica | 797 | 69.51% | 30.49% |
| All Japonica | 497 | 51.71% | 48.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 85.56% | 14.44% |
| Indica II | 212 | 34.43% | 65.57% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 70.45% | 29.55% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141834879 | C->T | INTERGENIC | None |