Detailed information of SNP:
|
SNP ID:
sf0141834882(Gbrowse)
Chromosome: chr01 Position: 41834882 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 77.83% | 22.17% |
| All Indica | 793 | 96.09% | 3.91% |
| All Japonica | 497 | 51.91% | 48.09% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141834882 | C->T | INTERGENIC | None |