Detailed information of SNP:
|
SNP ID:
sf0141858868(Gbrowse)
Chromosome: chr01 Position: 41858868 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1336 | 59.51% | 40.49% |
| All Indica | 722 | 32.96% | 67.04% |
| All Japonica | 492 | 98.58% | 1.42% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 340 | 14.71% | 85.29% |
| Indica II | 198 | 72.73% | 27.27% |
| Indica Intermediate | 184 | 23.91% | 76.09% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141858868 | A->G | INTERGENIC | None |