Detailed information of SNP:
|
SNP ID:
sf0141962507(Gbrowse)
Chromosome: chr01 Position: 41962507 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.90% | 15.10% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 495 | 61.21% | 38.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 76.72% | 23.28% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141962507 | C->T | INTERGENIC | None |