Detailed information of SNP:
|
SNP ID:
sf0141962751(Gbrowse)
Chromosome: chr01 Position: 41962751 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 88.99% | 11.01% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 427 | 69.32% | 30.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 303 | 85.15% | 14.85% |
| Tropical Japonica | 75 | 28.00% | 72.00% |
| Japonica Intermediate | 49 | 34.69% | 65.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141962751 | C->T | INTERGENIC | None |