Detailed information of SNP:
SNP ID:
sf0141962880(Gbrowse)
Chromosome: chr01 Position: 41962880 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1295 | 52.59% | 47.41% |
All Indica | 681 | 53.89% | 46.11% |
All Japonica | 492 | 56.30% | 43.70% |
Aus | 67 | 25.37% | 74.63% |
Indica I | 327 | 64.53% | 35.47% |
Indica II | 185 | 21.08% | 78.92% |
Indica Intermediate | 169 | 69.23% | 30.77% |
Temperate Japonica | 334 | 76.35% | 23.65% |
Tropical Japonica | 90 | 10.00% | 90.00% |
Japonica Intermediate | 68 | 19.12% | 80.88% |
Group VI/Aromatic | 14 | 35.71% | 64.29% |
Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0141962880 | A->G | INTERGENIC | None |