Detailed information of SNP:
|
SNP ID:
sf0141972160(Gbrowse)
Chromosome: chr01 Position: 41972160 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 78.88% | 21.12% |
| All Indica | 796 | 67.71% | 32.29% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 212 | 26.42% | 73.58% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141972160 | C->T | LOC_Os01g72370(LOC_Os01g72370.3) | INTRON |
| sf0141972160 | C->T | LOC_Os01g72370(LOC_Os01g72370.1) | UTR_3_PRIME |