Detailed information of SNP:
|
SNP ID:
sf0141974808(Gbrowse)
Chromosome: chr01 Position: 41974808 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.25% | 7.75% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141974808 | C->T | LOC_Os01g72370(LOC_Os01g72370.3) | INTRON |
| sf0141974808 | C->T | LOC_Os01g72370(LOC_Os01g72370.2) | INTRON |
| sf0141974808 | C->T | LOC_Os01g72370(LOC_Os01g72370.1) | INTRON |