Detailed information of SNP:
|
SNP ID:
sf0141975145(Gbrowse)
Chromosome: chr01 Position: 41975145 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 85.30% | 14.70% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 493 | 62.47% | 37.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 333 | 81.08% | 18.92% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141975145 | A->G | LOC_Os01g72370(LOC_Os01g72370.3) | INTRON |
| sf0141975145 | A->G | LOC_Os01g72370(LOC_Os01g72370.2) | INTRON |
| sf0141975145 | A->G | LOC_Os01g72370(LOC_Os01g72370.1) | INTRON |