Detailed information of SNP:
|
SNP ID:
sf0141979898(Gbrowse)
Chromosome: chr01 Position: 41979898 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.69% | 3.31% |
| All Indica | 770 | 94.16% | 5.84% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 94.54% | 5.46% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 196 | 93.88% | 6.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141979898 | A->T | INTERGENIC | None |