Detailed information of SNP:
|
SNP ID:
sf0141980589(Gbrowse)
Chromosome: chr01 Position: 41980589 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 69.49% | 30.51% |
| All Indica | 799 | 52.32% | 47.68% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141980589 | A->G | INTERGENIC | None |