Detailed information of SNP:
|
SNP ID:
sf0141986401(Gbrowse)
Chromosome: chr01 Position: 41986401 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.14% | 49.86% |
| All Indica | 798 | 50.88% | 49.12% |
| All Japonica | 497 | 43.46% | 56.54% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 46.13% | 53.87% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 210 | 32.38% | 67.62% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141986401 | T->G | LOC_Os01g72390(LOC_Os01g72390.1) | Non-Synonymous SNP |