Detailed information of SNP:
|
SNP ID:
sf0141988961(Gbrowse)
Chromosome: chr01 Position: 41988961 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.32% | 46.68% |
| All Indica | 796 | 55.03% | 44.97% |
| All Japonica | 497 | 56.14% | 43.86% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 373 | 65.42% | 34.58% |
| Indica II | 213 | 22.07% | 77.93% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141988961 | T->C | INTERGENIC | None |