Detailed information of SNP:
|
SNP ID:
sf0141995264(Gbrowse)
Chromosome: chr01 Position: 41995264 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 80.83% | 19.17% |
| All Indica | 780 | 67.31% | 32.69% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 75.75% | 24.25% |
| Indica II | 206 | 36.41% | 63.59% |
| Indica Intermediate | 207 | 83.09% | 16.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141995264 | T->C | LOC_Os01g72400(LOC_Os01g72400.1) | Non-Synonymous SNP |