Detailed information of SNP:
|
SNP ID:
sf0141995597(Gbrowse)
Chromosome: chr01 Position: 41995597 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 83.10% | 16.90% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 496 | 59.88% | 40.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141995597 | C->T | INTERGENIC | None |