Detailed information of SNP:
|
SNP ID:
sf0142008939(Gbrowse)
Chromosome: chr01 Position: 42008939 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 83.56% | 16.44% |
| All Indica | 798 | 85.46% | 14.54% |
| All Japonica | 496 | 77.22% | 22.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142008939 | G->A | INTERGENIC | None |