Detailed information of SNP:
|
SNP ID:
sf0142013142(Gbrowse)
Chromosome: chr01 Position: 42013142 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.41% | 44.59% |
| All Indica | 795 | 55.72% | 44.28% |
| All Japonica | 497 | 55.53% | 44.47% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 74.53% | 25.47% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142013142 | T->C | INTERGENIC | None |