Detailed information of SNP:
|
SNP ID:
sf0142014164(Gbrowse)
Chromosome: chr01 Position: 42014164 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 82.46% | 17.54% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 493 | 59.84% | 40.16% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 91 | 17.58% | 82.42% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142014164 | C->T | INTERGENIC | None |