Detailed information of SNP:
|
SNP ID:
sf0142029723(Gbrowse)
Chromosome: chr01 Position: 42029723 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.12% | 14.88% |
| All Indica | 799 | 78.22% | 21.78% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142029723 | G->A | INTERGENIC | None |