Detailed information of SNP:
|
SNP ID:
sf0142032024(Gbrowse)
Chromosome: chr01 Position: 42032024 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.17% | 39.83% |
| All Indica | 797 | 55.46% | 44.54% |
| All Japonica | 497 | 66.60% | 33.40% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 43.58% | 56.42% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 77.91% | 22.09% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142032024 | C->T | INTERGENIC | None |