Detailed information of SNP:
|
SNP ID:
sf0142053100(Gbrowse)
Chromosome: chr01 Position: 42053100 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.94% | 32.06% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 28.57% | 71.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142053100 | C->T | INTERGENIC | None |