Detailed information of SNP:
|
SNP ID:
sf0142060115(Gbrowse)
Chromosome: chr01 Position: 42060115 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 57.37% | 42.63% |
| All Indica | 749 | 75.83% | 24.17% |
| All Japonica | 495 | 24.44% | 75.56% |
| Aus | 51 | 96.08% | 3.92% |
| Indica I | 358 | 96.65% | 3.35% |
| Indica II | 194 | 20.62% | 79.38% |
| Indica Intermediate | 197 | 92.39% | 7.61% |
| Temperate Japonica | 333 | 4.80% | 95.20% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142060115 | A->T | INTERGENIC | None |