Detailed information of SNP:
|
SNP ID:
sf0142119093(Gbrowse)
Chromosome: chr01 Position: 42119093 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 71.01% | 28.99% |
| All Indica | 785 | 53.12% | 46.88% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 63.24% | 36.76% |
| Indica II | 209 | 22.01% | 77.99% |
| Indica Intermediate | 206 | 66.50% | 33.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142119093 | T->C | INTERGENIC | None |