Detailed information of SNP:
|
SNP ID:
sf0142147354(Gbrowse)
Chromosome: chr01 Position: 42147354 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 79.13% | 20.87% |
| All Indica | 798 | 63.41% | 36.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 48.66% | 51.34% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142147354 | T->A | INTERGENIC | None |