Detailed information of SNP:
|
SNP ID:
sf0142199775(Gbrowse)
Chromosome: chr01 Position: 42199775 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.51% | 6.49% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142199775 | G->A | INTERGENIC | None |