Detailed information of SNP:
|
SNP ID:
sf0142226400(Gbrowse)
Chromosome: chr01 Position: 42226400 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.37% | 34.63% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 496 | 24.80% | 75.20% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 334 | 8.38% | 91.62% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142226400 | C->T | LOC_Os01g72780(LOC_Os01g72780.1) | Non-Synonymous SNP |