Detailed information of SNP:
|
SNP ID:
sf0142241058(Gbrowse)
Chromosome: chr01 Position: 42241058 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 66.60% | 33.40% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 27.16% | 72.84% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142241058 | G->A | LOC_Os01g72820(LOC_Os01g72820.6) | INTRON |
| sf0142241058 | G->A | LOC_Os01g72820(LOC_Os01g72820.3) | INTRON |
| sf0142241058 | G->A | LOC_Os01g72820(LOC_Os01g72820.4) | INTRON |
| sf0142241058 | G->A | LOC_Os01g72820(LOC_Os01g72820.5) | INTRON |
| sf0142241058 | G->A | LOC_Os01g72820(LOC_Os01g72820.2) | INTRON |
| sf0142241058 | G->A | LOC_Os01g72820(LOC_Os01g72820.1) | INTRON |